I. Morita, A. Faraone, E. Salvisberg, K. Zhang, R.P. Jakob, T. Maier, T.R. Ward "Directed Evolution of an Artificial Hydroxylase Based on a Thermostable Human Carbonic Anhydrase Protein" Zenodo 2025, 10.5281/zenodo.14923328.
V. Maffeis, M. Skowicki, K.M.P. Wolf, M. Chami, C-A. Schoenenberger, V. Vogel, C.G. Palivan "Advancing the design of artificial nano-organelles for targeted cellular detoxification of reactive oxygen species" Zenodo 2024, 10.5281/zenodo.10599849.
J. Pulparayil Mathew, C. Seno, M. Jaiswal, C. Simms, N. Reichholf, D. Van den Eynden, T.N. Parac-Vogt, J. De Roo "The central role of oxo clusters in zirconium-based esterification catalysis" Zenodo 2024, 10.5281/zenodo.13782981.
D. Chen, X. Zhang, A.A. Vorobieva, R. Tachibana, A. Stein, R.P. Jakob, Z. Zou, D.A. Graf, A. Li, T. Maier, B.E. Correia, T.R. Ward "An evolved artificial radical cyclase enables the construction of bicyclic terpenoid scaffolds via an H-atom transfer pathway" Zenodo 2024, 10.5281/zenodo.12914139.
A. Strassberger, M. Zengaffinen, J. Puigcerver Alarcon, N. Trapp, K. Tiefenbacher "Quinoacridane[4]arenes – very large conformationally restricted macrocycles" Zenodo 2024, 10.5281/zenodo.12608270.
K. Yu, K. Zhang, R. Jakob, T. Maier, T.R. Ward "An artificial nickel chlorinase based on the biotin–streptavidin technology" Zenodo 2024, 10.5281/zenodo.12515594.
A. Jozeliūnaitė, S-Y. Guo, N. Sakai, S. Matile "Electric-Field Catalysis on Carbon Nanotubes in Electromicrofluidic Reactors: Monoterpene Cyclizations: Original Data" Zenodo 2024, 10.5281/zenodo.13165225.
S. Saidjalolov, F. Coelho, V. Mercier, D. Moreau, S. Matile "Inclusive Pattern Generation Protocols to Decode Thiol-Mediated Uptake: Original Data" Zenodo 2024, 10.5281/zenodo.10675774.
T. Vornholt, M. Mutny "Enhanced Sequence-Activity Mapping and Evolution of Artificial Metalloenzymes by Active Learning" Zenodo 2024, 10.5281/zenodo.12578394.
Q-X. Zhang, G. Renno, J.J. Nué-Martinez, C. Besnard, R.M. Gomila, A. Frontera, N. Sakai, S. Matile "Pnictogen-Bonding Catalysis Compared to Ion Transport in Lipid Bilayer Membranes: Original Data" Zenodo 2024, 10.5281/zenodo.13165075.
Z. Zou, S. Wu, D. Gerngross, B. Lozhkin, D. Chen, R. Tachibana, T.R. Ward "Combining an artificial metathase with a fatty acid decarboxylase in a whole cell for cycloalkene synthesis" Zenodo 2024, 10.5281/zenodo.12755335.
X. Zhang, D. Chen, J. Stropp, R. Tachibana, Z. Zou, D. Klose, T.R. Ward "Repurposing myoglobin into an abiological asymmetric ketoreductase" Zenodo 2024, 10.5281/zenodo.13771488.
L. Heuberger, M. Korpidou, A. Guinart Planellas, D. Doellerer, D. Monserrat Lopez, C-A. Schoenenberger, D. Milinkovic, E. Loertscher, B. Feringa, C.G. Palivan "Photoreceptor-like Signal Transduction Between Polymer-Based Protocells" Zenodo 2024, 10.5281/zenodo.10778461.
K. Yu, R. Tachibana, C. Rumo, N.V. Igareta, K. Zhang, T.R. Ward "Artificial Metalloenzyme-Catalyzed Enantioselective Carboamination of Alkenes" Zenodo 2024, 10.5281/zenodo.12683879.
S. Saidjalolov, X-X. Chen, J. Moreno, M. Cognet, L. Wong-Dilworth, F. Bottanelli, N. Sakai, S. Matile "Asparagusic Golgi Trackers: Original Data" Zenodo 2024, 10.5281/zenodo.12750854.
F. Bayard, S. Matile "Fluorescent Membrane Probes Obey the Israelachvili Rules: Original Data" Zenodo 2024, 10.5281/zenodo.11120506.
G. Renno, Q-X. Zhang, A. Frontera, N. Sakai, S. Matile "A Fluorogenic Substrate for Quinoline Reduction: Pnictogen-Bonding Catalysis in Aqueous Systems: Original Data" Zenodo 2024, 10.5281/zenodo.10732061.
G. Persiani, D. Sokolova, R. Ivanov, S. Merget, T. Maintok, D. Häussinger, K. Tiefenbacher "Catalyzing the Enantioselective Tail-to-Head Terpene Cyclization inside Optically Active Hexameric Resorcin[4]arene Capsules: A surprising odd-even effect of the catalyst" Zenodo 2024, 10.5281/zenodo.11035328.
M. Mukherjee, V. Waser, E. Morris, N.V. Igareta, A.H. Follmer, R.P. Jakob, D. Üzümcü, T. Maier, T.R. Ward "Artificial Peroxidase Based on the Biotin-Streptavidin Technology that Rivals the Efficiency of Natural Peroxidases" Zenodo 2024, 10.5281/zenodo.14033708.
F. Coelho, L. Zeisel, O. Thorn-Seshold, S. Matile "Selenium-Centered Cascade Exchangers and Conformational Control Unlock Unique Patterns of Thiol-Mediated Cellular Uptake: Original Data" Zenodo 2024, 10.5281/zenodo.11907509.
A. Marchand, S. Buckley, A. Schneuing, B.E. Correia "Targeting protein-ligand neosurfaces using a generalizable deep learning approach [benchmark dataset]" Zenodo 2024, 10.5281/zenodo.11509000.
K.K. Puji Pamungkas, I. Fureraj, L. Assies, N. Sakai, V. Mercier, X-X. Chen, E. Vauthey, S. Matile "Core-Alkynylated Fluorescent Flippers: Altered Ultrafast Photophysics to Track Thick Membranes: Original Data" Zenodo 2024, 10.5281/zenodo.11120574.
M. Korpidou, J. Becker, S. Tarvirdipour, I.A. Dinu, R. Becer, C. Palivan "Glycooligomer-Functionalized Catalytic Nanocompartments Co-Loaded with Enzymes Support Parallel Reactions and Promote Cell Internalization" Zenodo 2024, https://zenodo.org/records/12515325.
G. Renno, D. Chen, Q-X. Zhang, R.M. Gomila, A. Frontera, N. Sakai, T.R. Ward, S. Matile "Pnictogen-Bonding Enzymes: Original Data" Zenodo 2024, 10.5281/zenodo.12608782.
X.X. Chen, R.M. Gomila, J.M. Garcia-Arcos, M. Vonesch, N. Gonzalez-Sanchis, A. Roux, A. Frontera, N. Sakai, S. Matile "Fluorogenic In Situ Thioacetalization: Original Data" Zenodo 2023, 10.5281/zenodo.8207277.
H. Liu, Z. Liu, S. M. Santos, M.A. Nash "Direct Comparison of Lysine versus Site-Specific Protein Surface Immobilization in Single-molecule Mechanical Assays" Zenodo 2023, 10.5281/zenodo.8090454.
J.R.J. Maynard, S. Saidjalolov, M-C. Velluz, S. Vossio, C. Aumeier, D. Moreau, N. Sakai, S. Matile "Toward a Traceless Tag for the Thiol-Mediated Uptake of Proteins: Original Data" Zenodo 2023, 10.5281/zenodo.8126459.
F. Coelho, S. Saidjalolov, D. Moreau, O. Thorn-Seshold, S. Matile "Inhibition of Cell Motility by Cell-Penetrating Dynamic Covalent Cascade Exchangers: Integrins Participate in Thiol-Mediated Uptake" Zenodo 2023, 10.5281/zenodo.7783829.
D. Harder, N. Ritzmann, Z. Ucurum, D.J. Müller, D. Fotiadis "Python code/scripts to control Arduino Nano microcontroller - Harder et al." Zenodo 2023, 10.5281/zenodo.8407646.
K. Yu, Z. Zou, N.V. Igareta, R. Tachibana, J. Bechter, V. Köhler, D. Chen, T.R. Ward "Artificial Metalloenzyme-Catalyzed Enantioselective Amidation via Nitrene Insertion in Unactivated C(sp3)–H Bonds" Zenodo 2023, 10.5281/zenodo.8272173.
C. Wang, C. Wegeberg, O.S. Wenger "Raw data of the publication titled 'First-row d6 metal complex enables photon upconversion and initiates blue light-dependent polymerization with red light'" Zenodo 2023, 10.5281/zenodo.8196148.
M.A. Gutiérrez López, R. Ali, M-L. Tan, N. Sakai, T. Wirth, S. Matile "Electric-field-induced anion-π catalysis on carbon nanotubes in electrochemical microfluidic devices: Original Data" Zenodo 2023, 10.5281/zenodo.8288434.
J. García-Calvo, X-X. Chen, N. Sakai, S. Matile, T. Torres "Subphthalocyanine-flipper dyads for selective membrane staining: Original Data" Zenodo 2023, 10.5281/zenodo.10304797.
P. Gainza, B.E. Correia "Code for Rules and mechanisms governing G protein coupling selectivity of GPCRs" Zenodo 2023, 10.5281/zenodo.8271719.
M.L. Tan, M. Angeles Gutierrez Lopez, N. Sakai, S. Matile "Anion-(π)n-π Catalytic Micelles: Original Data" Zenodo 2023, 10.5281/zenodo.8210689.
J. Lopez-Morales, R. Vanella, T. Utzinger, V. Schittny, J. Hirsiger, M. Osthoff, C.T. Berger, Y. Guri, M.A. Nash "Multiplexed On-Yeast Serological Assay for Immune Escape Screening of SARS-CoV-2 Variants" Zenodo 2023, 10.5281/zenodo.7767370.
L. Heuberger, D. Messmer, E.C. dos Santos, D. Scherrer, E. Lörtscher, C-A. Schoenenberger, C.G. Palivan "Microfluidic Giant Polymer Vesicles Equipped with Biopores for High-Throughput Screening of Bacteria" Zenodo 2023, 10.5281/zenodo.7624092.
B. Lim, N. Sakai, S. Matile "Tetrel-Centered Exchange Cascades to Decouple Inhibition and Induction of Thiol-Mediated Uptake: Introducing Cell-Penetrating Thiolactones, Focus on Reversible Michael Acceptor Dimers" Zenodo 2023, 10.5281/zenodo.7756316.
J. Bouffard, F. Coelho, N. Sakai, S. Matile "Dynamic Phosphorus: Thiolate Exchange Cascades with Higher Phosphorothioates: Open data" Zenodo 2023, 10.5281/zenodo.10001249.
M.A. Gutiérrez López, M-L. Tan, A. Frontera, S. Matile "The Origin of Anion-π Autocatalysis" Zenodo 2023, 10.5281/zenodo.7575443.
M. Munz, A. Bharioke, B. Roska "Custom code for 'Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex (2023)'" Zenodo 2023, 10.5281/zenodo.7689305.
F. Bayard, X-X. Chen, J.M. García‐Arcos, A. Roux, N. Sakai, S. Matile "Hydrophobic Interfacing of Fluorescent Membrane Probes: Original Data" Zenodo 2023, 10.5281/zenodo.8256212.
J. Fernández De Santaella, J. Ren, R. Vanella, M.A. Nash "Enzyme Cascade with Horseradish Peroxidase Readout for High-Throughput Screening and Engineering of Human Arginase-1" Zenodo 2023, https://zenodo.org/records/7920813.
L. Assies, V. Mercier, J. López-Andarias, A. Roux, N. Sakai, S. Matile "The Dynamic Range of Acidity: Tracking Rules for the Unidirectional Penetration of Cellular Compartments" Zenodo 2022, 10.5281/zenodo.6496764.
H. Chen, A. Frontera, M.A.G López, N. Sakai, S. Matile "Pnictogen-Bonding Catalysts, Compared to Tetrel-Bonding Catalysts: More Than Just Weak Lewis Acids"Zenodo 2022, 10.5281/zenodo.7243856.
Z. Liu, R. Moreira, A. Dujmović, H. Liu, B. Yang, A.B. Poma, M.A. Nash "Mapping Mechanostable Pulling Geometries of a Therapeutic Anticalin/CTLA-4 Protein Complex" Zenodo 2022, 10.5281/zenodo.6579520.
I. Shybeka, J:R.J. Maynard, S. Saidjalolov, D. Moreau, N. Sakai, S. Matile "Dynamic Covalent Michael Acceptors to Penetrate Cells: Thiol-Mediated Uptake with Tetrel-Centered Exchange Cascades, Assisted by Halogen-Bonding Switche" Zenodo 2022, 10.5281/zenodo.7164388.
J. Lopez-Morales, R. Vanella, G. Kovacevic, M.S. Santos, M.A. Nash "Titrating Avidity of Yeast-Displayed Proteins Using a Transcriptional Regulator" Zenodo 2022, 10.5281/zenodo.7711650.
H. Chen, T-R. Li, N. Sakai, C. Besnard, L. Guénée, M. Pupier, J. Viger-Gravel, K. Tiefenbacher, S. Matile"Decoded fingerprints of hyperresponsive, expanding product space from polyether cascade cyclizations as tools to elucidate supramolecular catalysis" Zenodo 2022, 10.5281/zenodo.6719512.
M. Korpidou, V. Maffeis, I.A. Dinu, C-A. Schoenenberger, W. Meier, C.G. Palivan "Inverting glucuronidation of hymecromone in situ by catalytic nanocompartments" Zenodo 2022,10.5281/zenodo.6489758.
M. Mahameed, W. Pengli, X. Shuai, M. Fussenegger "Engineering Receptors in the Secretory Pathway for Orthogonal Signalling Control" Zenodo 2022, 10.5281/zenodo.7340732.
N. Sakai, L. Assies, S. Matile "G-Quartets, 4-Way Junctions and Triple Helices but not DNA Duplexes: Planarization of Twisted Push-Pull Flipper Probes by Surface Recognition Rather than Physical Compression" Zenodo 2022, 10.5281/zenodo.6637584.
H. Liu, Z. Liu, B. Yang, J. Lopez Morales, M.A. Nash "Optimal Sacrificial Domains in Mechanical Polyproteins: S. epidermidis Adhesins Are Tuned for Work Dissipation" Zenodo 2022, 10.5281/zenodo.7018922.
V. Maffeis, D. Hürlimann, A. Krywko-Cendrowska, C-A. Schoenenberger, C. Housecroft, C.G. Palivan "A DNA-Micropatterned Surface for Propagating Biomolecular Signals by Positional on-off Assembly of Catalytic Nanocompartments" Zenodo 2022,10.5281/zenodo.7018800.
H. Wang, M. Xie, G. Rizzi, X. Li, K. Tan, M. Fussenegger "Identification of Sclareol As a Natural Neuroprotective Cav1.3-Antagonist Using Synthetic Parkinson-Mimetic Gene Circuits and Computer-Aided Drug Discovery" Zenodo 2022, 10.5281/zenodo.6381863.
T.-R. Li, F. Huck, G. Piccini, K. Tiefenbacher "Mimicry of the Proton Wire Mechanism of Enzymes Inside a Supramolecular Capsule Enables β-Selective O-Glycosylations" Zenodo 2022, 10.5281/zenodo.6337479.
B. Lim, T. Kato, C. Besnard, A. I. Poblador Bahamonde, N. Sakai, S. Matile "Unifying Pnictogen and Chalcogen Exchange Cascades for Thiol-Me- diated Uptake: As(III), Sb(III) and Bi(III) Expanded Cyclic Disulfides as Inhibitors of Cytosolic Delivery and Viral Entry" Zenodo 2022, 10.5281/zenodo.6323009.
M. Stauffer, J.-M. Jeckelmann, H Ilgü, Z. Ucurum, R. Boggavarapu, D. Fotiadis "Peptide transporter structure reveals binding and action mechanism of a potent PEPT1 and PEPT2 inhibitor" Zenodo 2022, 10.5281/zenodo.6247592.
N. Nuti, P. Rottmann, A. Stucki, P. Koch, S. Panke, P. S. Dittrich "A Multiplexed Cell-Free Assay to Screen for Antimicrobial Peptides in Double Emulsion Droplets" Zenodo 2022, 10.5281/zenodo.6089683.
Z. He, A. Maynard, A. Jain, T. Gerber, R. Petri, H.-C. Lin, M. Santel, K. Ly, J.-S. Dupré, L. Sidow, F. S. Calleja, S. M. J. Jansen, S. Riesenberg, J. G. Camp, B. Treutlein "Lineage Recording in Human Cerebral Organoids" Zenodo 2022, 10.5281/zenodo.6009989.
T. Kato, B. Lim, Y. Cheng, A.-T. Pham, J. Maynard, D. Moreau, A. I. Poblador-Bahamonde, N. Sakai, S. Matile "Cyclic Thiosulfonates for Thiol-Mediated Uptake: Cascade Exchangers, Transporters, Inhibitors" Zenodo 2022, 10.5281/zenodo.6006519.
L. Deblock, E. Goossens, R. Pokratath, K. De Buysser, J. De Roo "Mapping out the aqueous surface chemistry of metal oxide nanocrystals; carboxylate, phosphonate and catecholate ligands" Zenodo 2022, 10.5281/zenodo.5905392.
G. Born, M. Nikolova, A. Scherberich, B. Treutlein, A. García-García, I. Martin "Engineering of Fully Humanized and Vascularized 3D Bone Marrow Niches Sustaining Undifferentiated Human Cord Blood Hematopoietic Stem and Progenitor Cells" Zenodo 2022, 10.5281/zenodo.5896637.
N. Franko, A. P. Teixeira, S. Xue, G. Charpin-El Hamri, M. Fussenegger "Design of Modular Autoproteolytic Gene Switches Responsive to Anti-Coronavirus Drug Candidates" Zenodo 2022, 10.5281/zenodo.5884207.
R. Altamura, J. Doshi, Y. Benenson "Rational Design and Construction of Multi-Copy Biomanufacturing Islands in Mammalian Cells" Zenodo 2022, 10.5281/zenodo.5884052.
B. Angelici, L. Shen, J. Schreiber, A. Abraham, Y. Benenson "An AAV Gene Therapy Computes Over Multiple Cellular Inputs to Enable Precise Targeting of Multifocal Hepatocellular Carcinoma in Mice" Zenodo 2022, 10.5281/zenodo.5883917.
A. Stein, D. Chen, N. V. Igareta, Y. Cotelle, J. G. Rebelein, T. R. Ward "A Dual Anchoring Strategy for the Directed Evolution of Improved Artificial Transfer Hydrogenases Based on Carbonic Anhydrase" Zenodo 2022, 10.5281/zenodo.5833302.
J. García-Calvo, J. López-Andarias, J. Maillard, V. Mercier, C. Roffay, A. Roux, A. Fürstenberg, N. Sakai, S. Matile "HydroFlipper membrane tension probes" Zenodo 2021, 10.5281/zenodo.5801915.
M. S. Santos, H. Liu, V. Schittny, R. Vanella, M. A. Nash "Correlating single-molecule rupture mechanics with cell population adhesion by yeast display" Zenodo 2021, 10.5281/zenodo.5793733.
P. R. Laskowski, K. Pluhackova, M. Haase, B. M. Lang, G. Nagler, A. Kuhn, D. J. Müller "Monitoring the binding and insertion of a single transmembrane protein by an insertase" Zenodo 2021, 10.5281/zenodo.5776082.
J. García-Calvo, J. López-Andarias, N. Sakai, S. Matile "Planarizable Push-Pull Probes with Sulfoximine-Bridged Dithienothiophene Acceptors" Zenodo 2021, 10.5281/zenodo.5732052.
L. A. Rua, M. Mumme, C. Manferdini, S. Darwiche, A. Khalil, M. Hilpert, D. A. Buchner, G. Lisignoli, P. Occhetta, B. von Rechenberg, M. Haug, D. J. Schaefer, M. Jakob, A. Caplan, I. Martin, A. Barberoand, K. Pelttari "Engineered nasal cartilage for the repair of osteoarthritic knee cartilage defects" Zenodo 2021, 10.5281/zenodo.5702616.
D. J. Müller "MuellerLabETHZ/BamA_darobactin: Content of BamA_Darobactin" Zenodo 2021, 10.5281/zenodo.5647098.
J. López-Andarias, K. Eblighatian, Q. T. L. Pasquer, L. Assies, N. Sakai, S. Hoogendoorn, S. Matile "Photocleavable Fluorescent Membrane Tension Probes" Zenodo 2021, 10.5281/zenodo.5585964.
L. Zartner, V. Maffeis, C.-A. Schoenenberger, I. A. Dinu, C. G. Palivan "Membrane Protein Channels Equipped With a Cleavable Linker for Inducing Catalysis Inside Nanocompartments" Zenodo 2021, 10.5281/zenodo.5561937.
A. García-García, T. Klein, G. Born, M. Hilpert, A. Scherberich, C. Lengerke, R. C. Skoda, P. E. Bourgine, I. Martin "Culturing Patient-Derived Malignant Hematopoietic Stem Cells in Engineered and Fully Humanized 3D Niches" Zenodo 2021, 10.5281/zenodo.5560919.
R. Wehr, E. C. dos Santos, M. S. Muthwill, V. Chimisso, J. Gaitzsch, W. Meier "Fully amorphous atactic and isotactic block copolymers and their self-assembly into nano- and microscopic vesicles" Zenodo 2021, 10.5281/zenodo.5560880.
R. Martinent, S. Matile "Dithiolane quartets: Thiol-mediated uptake enables cytosolic delivery in deep tissue" Zenodo 2021, 10.5281/zenodo.5515807.
M. A. Saucedo-Espinosa, P. S. Dittrich "In-Droplet Electrophoretic Separation and Enrichment of Biomolecules" Zenodo 2021, 10.5281/zenodo.5148160.
J. S. Fleck, F. Sanchís-Calleja, Z. He, M. Santel, M. J. Boyle, J. G. Camp, B.Treutlein "Resolving Organoid Brain Region Identities by Mapping Single-Cell Genomic Data to Reference Atlases" Zenodo 2021, 10.5281/zenodo.5148000.
M. A. Beliaeva, F. Leisinger, F. P. Seebeck "In Vitro Reconstitution of a Five-Step Pathway for Bacterial Ergothioneine Catabolism" Zenodo 2021, 10.5281/zenodo.5145392.
F. Leisinger, D. A. Miarzlou, F. P. Seebeck "Non-Coordinative Binding of O2 at the Active Center of a Copper-Dependent Enzyme" Zenodo 2021, 10.5281/zenodo.5145371.
M. A. Beliaeva, R. Burn, D. Lim, F. P. Seebeck "In Vitro Production of Ergothioneine Isotopologues" Zenodo 2021, 10.5281/zenodo.5145352.
D. Lim, X. Wen, F. P. Seebeck "Selenoimidazolium Salts as Supramolecular Reagents for Protein Alkylation" Zenodo 2021, 10.5281/zenodo.5145302.
J. Serrano-Plana, C. Rumo, J. G. Rebelein, R. L. Peterson, M. Barnet, T. R. Ward "Enantioselective Hydroxylation of Benzylic C(sp3)–H Bonds by an Artificial Iron Hydroxylase Based on the Biotin–Streptavidin Technology" Zenodo 2021, 10.5281/zenodo.5137190.
D. Scherrer, D. Vogel, U. Drechsler, A. Olziersky, C. Sparr, M. Mayor, E. Lörtscher "Monitoring Solid-Phase Reactions in Self-Assembled Monolayers by Surface-Enhanced Raman Spectroscopy" Zenodo 2021, 10.5281/zenodo.5121608.
M. Mansouri, M.-D. Hussherr, T. Strittmatter, P. Buchmann, S. Xue, G. Camenisch, M. Fussenegger "Smart-Watch-Programmed Green-Light-Operated Percutaneous Control of Therapeutic Transgenes" Zenodo 2021, 10.5281/zenodo.5119105.
G. Fläschner, C. I. Roman, N. Strohmeyer, D. Martinez-Martin, D. J. Müller "Rheology of Rounded Mammalian Cells Over Continuous High-Frequencies" Zenodo 2021, 10.5281/zenodo.5118965.
H. Dekkiche, J. Malinčik, A. Prescimone, D. Häussinger, M. Mayor "An Ortho-Tetraphenylene-Based «Geländer»-Architecture Consisting Exclusively of 52 sp2 Hybridized C-Atoms" Zenodo 2021, 10.5281/zenodo.5118919.
V. Sabatino, D. Staub, T. R. Ward "Synthesis of N-Substituted Indoles via Aqueous Ring-Closing Metathesis" Zenodo 2021, 10.5281/zenodo.5118840.
L. Zartner, M. Garni, I. Craciun, T. Einfalt, C. G. Palivan "How Can Giant Plasma Membrane Vesicles Serve as a Cellular Model for Controlled Transfer of Nanoparticles?" Zenodo 2021, 10.5281/zenodo.5101536.
A. Belluati, I. Craciun, C. G. Palivan "Bioactive Catalytic Nanocompartments Integrated into Cell Physiology and Their Amplification of a Native Signaling Cascade" Zenodo 2021, 10.5281/zenodo.5101442.
S. Rigo, D. Hürlimann, L. Marot, M. Malmsten, W. Meier, C. G. Palivan "Decorating Nanostructured Surfaces with Antimicrobial Peptides to Efficiently Fight Bacteria" Zenodo 2021, 10.5281/zenodo.5101413.
S. Hirschi, D. Kalbermatter, Z. Ucurum, T. Lemmin, D. Fotiadis "Cryo-EM structure and dynamics of the green-light absorbing proteorhodopsin" Zenodo 2021, 10.5281/zenodo.5101367.
A. Samanta, V. Sabatino, T. R. Ward, A. Walther "Functional and morphological adaptation in DNA protocells via signal processing prompted by artificial metalloenzymes" Zenodo 2021, 10.5281/zenodo.5101328.
S. Hirschi, D. Kalbermatter, Z. Ucurum, D. Fotiadis "Cryo-electron microscopic and X-ray crystallographic analysis of the light- driven proton pump proteorhodopsin reveals a pentameric assembly" Zenodo 2021, 10.5281/zenodo.5092129.
J. Liu, I. Craciun, A. Belluati, D. Wu, S. Sieber, T. Einfalt, D. Witzigmann, M. Chami, J. Huwyler, C. G. Palivan "DNA-Directed Arrangement of Soft Synthetic Compartments and Their Behavior In Vitro and In Vivo" Zenodo 2021, 10.5281/zenodo.5091745.
C. E. Meyer, J. Liu, I. Craciun, D. Wu, H. Wang, M. Xie, M. Fussenegger, C. G. Palivan "Segregated Nanocompartments Containing Therapeutic Enzymes and Imaging Compounds within DNA-Zipped Polymersome Clusters for Advanced Nanotheranostic Platform" Zenodo 2021, 10.5281/zenodo.5091657.
T. Vornholt, F. Christoffel, M. M. Pellizzoni, S. Panke, T. R. Ward, M. Jeschek "Systematic Engineering of Artificial Metalloenzymes for New-to-Nature Reactions" Zenodo 2021, 10.5281/zenodo.5084376.
R. Wehr, J. Gaitzsch, D. Daubian, C. Fodor, W. Meier "Deepening the Insight into Poly(butylene oxide)-block-poly(glycidol) Synthesis and Self-assemblies: Micelles, Worms and Vesicles" Zenodo 2021, 10.5281/zenodo.5084338.
S. D. Leone, S. Y. Avsar, A. Belluati, R. Wehr, C. G. Palivan, W. Meier "Polymer–Lipid Hybrid Membranes as a Model Platform to Drive Membrane–Cytochrome c Interaction and Peroxidase-like Activity" Zenodo 2021, 10.5281/zenodo.5084290.
E. C. dos Santos, A. Belluati, D. Necula, D. Scherrer, C. E. Meyer, R. P. Wehr, E. Lörtscher, C. G. Palivan, W. Meier "Combinatorial Strategy for Studying Biochemical Pathways in Double Emulsion Templated Cell-Sized Compartments" Zenodo 2021, 10.5281/zenodo.5084257.
A. Castrogiovanni, D. Lotter, F. R. Bissegger, C. Sparr "JoyaPhos: An Atropisomeric Teraryl Monophosphine Ligand" Zenodo 2021, 10.5281/zenodo.5082320.
F. C. Raps, V. C. Fäseke, D. Häussinger, C. Sparr "Catalyst-Controlled Transannular Polyketide Cyclization Cascades: Selective Folding of Macrocyclic Polyketides" Zenodo 2021, 10.5281/zenodo.5082291.
S. Di Leone, J. Vallapurackal, S. Y. Avsar, M. Kyropolou, T. R. Ward, C. G. Palivan, W. Meier "Expanding the Potential of the Solvent-Assisted Method to CreateBio-Interfaces from Amphiphilic Block Copolymers" Zenodo 2021, 10.5281/zenodo.5082230.
D. Daubian, J. Gaitzsch, W. Meier "Synthesis and Complex Self-Assembly of Amphiphilic Block Copolymers with a Branched Hydrophobic Poly(2-oxazoline) into Multicompartment Micelles, Pseudovesicles and Yolk/Shell Nanoparticles" Zenodo 2021, 10.5281/zenodo.5082191.
F. Sedlmayer, A.-K. Woischnig, V. Unterreiner, F. Fuchs, D. Baeschlin, N. Khanna, M. Fussenegger "5-Fluorouracil blocks quorum-sensing of biofilm-embedded methicillin-resistant Staphylococcus aureus in mice" Zenodo 2021, 10.5281/zenodo.5081731.
M. Reich, M. Dreesbach, D. Boehringer, J. Schottenhamml, E. Gehring, H. P. Scholl, N. Inglin, H. Agostini, T. Reinhard, W. A. Lagrèze, R. F. Spaide, C. Lange, P. M. Maloca "Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography" Zenodo 2021, 10.5281/zenodo.5079729.
F. Zuttion, A. Colom, S. Matile, D. Farago, F. Pompeo, J. Kokavecz, A. Galinier, J. Sturgis, I. Casuso "High-Speed Atomic Force Microscopy Highlights New Molecular Mechanism of Daptomycin Action" Zenodo 2021, 10.5281/zenodo.5079540.
B. Pfund, D. M. Steffen, M. R. Schreier, M.-S. Bertrams, C. Ye, K. Börjesson, O. S. Wenger, C. Kerzig "UV Light Generation and Challenging Photoreactions Enabled by Upconversion in Water" Zenodo 2021, 10.5281/zenodo.5079343.
M. R. Schreier, B. Pfund, X. Guo, O. S. Wenger "Photo-triggered hydrogen atom transfer from an iridium hydride complex to unactivated olefins" Zenodo 2021, 10.5281/zenodo.5079130.
K. Jahnke, N. Ritzmann, J. Fichtler, A. Nitschke, Y. Dreher, T. Abele, G. Hofhaus, I. Platzman, R. R. Schröder, D. J. Müller, J. P. Spatz, K. Göpfrich "Proton Gradients from Light-Harvesting E. coli Control DNA Assemblies for Synthetic Cells" Zenodo 2021, 10.5281/zenodo.5078924.
M. Knezevic, M. Heilmann, G. M. Piccini, K. Tiefenbacher "Overriding Intrinsic Reactivity in Aliphatic C−H Oxidation: Preferential C3/C4 Oxidation of Aliphatic Ammonium Substrates" Zenodo 2021, 10.5281/zenodo.5078544.
L.-D. Syntrivanis, I. Némethová, D. Schmid, S. Levi, A. Prescimone, F. Bissegger, D. T. Major, K. Tiefenbacher "Four-Step Access to the Sesquiterpene Natural Product Presilphiperfolan-1β-ol and Unnatural Derivatives via Supramolecular Catalysis" Zenodo 2021, 10.5281/zenodo.5078512.
S. J. Nemat, H. Jędrzejewska, A. Prescimone, A. Szumna, K. Tiefenbacher "Catechol[4]arene: The Missing Chiral Member of the Calix[4]arene Family" Zenodo 2021, 10.5281/zenodo.5078453.
K. Krawczyk, L. Scheller, H. Kim, M. Fussenegger "Rewiring of endogenous signaling pathways to genomic targets for therapeutic cell reprogramming" Zenodo 2021, 10.5281/zenodo.5078411.
K. Krawczyk, S. Xue, P. Buchmann, G. Charpin-El-Hamri, P. Saxena, M.-D. Hussherr, J. Shao, H. Ye, M. Xie, M. Fussenegger "Electrogenetic cellular insulin release for real-time glycemic control in type 1 diabetic mice" Zenodo 2021, 10.5281/zenodo.5078383.
H. J. Davis, D. Häussinger, T. R. Ward, Y. Okamoto "A visible-light promoted amine oxidation catalyzed by a Cp*Ir complex" Zenodo 2021, 10.5281/zenodo.5078354.
K. Strakova, S. Matile "Twisting and tilting of a mechanosensitive molecular probe detects order in membranes" Zenodo 2021, 10.5281/zenodo.5041772.
A. Stucki, P. Jusková, N. Nuti, S. Schmitt, P. S. Dittrich "Synchronized reagent delivery in double emulsions for triggering chemical reactions and gene expression" Zenodo 2021, 10.5281/zenodo.5004699.
V. Haellman, P. Saxena, Y. Jiang, M. Fussenegger "Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells" Zenodo 2021, 10.5281/zenodo.4980485.
V. Haellman, T. Strittmatter, A. Bertschi, P. Stücheli, M. Fussenegger "A versatile plasmid architecture for mammalian synthetic biology (VAMSyB)" Zenodo 2021, 10.5281/zenodo.4980395.
J. Doshi, K. Willis, A. Madurga, C. Stelzer, Y. Benenson "Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells" Zenodo 2021, 10.5281/zenodo.4916150.
O. Zabek, H. C. Zuche, U. Müller, H. P. N. Scholl, A. Rickmann, M. della Volpe Waizel "Optical coherence tomography angiography findings in patients undergoing transcorneal electrical stimulation for treating retinitis pigmentosa" Zenodo 2021, 10.5281/zenodo.4916061.
S. Höllerer, L. Papaxanthos, A. C. Gumpinger, K. Fischer, C. Beisel, K. Borgwardt, Y. Benenson, & M. Jeschek "Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping" Zenodo 2021, 10.5281/zenodo.4911473.
L. Scheller, M. Schmollack, A. Bertschi, M. Mansouri, P. Saxena, M. Fussenegger "Phosphoregulated orthogonal signal transduction in mammalian cells" Zenodo 2021, 10.5281/zenodo.4911457.
G. Giordano-Attianese, P. Gainza, E. Gray-Gaillard, E. Cribioli, S. Shui, S. Kim, M.-J. Kwak, S. Vollers, A. D. J. C. Osorio, P. Reichenbach, J. Bonet, B.-H. Oh, M. Irving, G. Coukos, B. E. Correia "A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy" Zenodo 2021, 10.5281/zenodo.4905683.
M. Rybiński, S. Möller, M. Sunnåker, C. Lormeau, J. Stelling "TopoFilter: a MATLAB package for mechanistic model identification in systems biology" Zenodo 2021, 10.5281/zenodo.4899363.
T. Tanna, F. Schmidt, M. Y. Cherepkova, M. Okoniewski, R. J. Platt "Recording transcriptional histories using Record-seq" Zenodo 2021, 10.5281/zenodo.4899333.
D. M. Mason, S. Friedensohn, C. R. Weber, C. Jordi, B. Wagner, S. M. Meng, R. A. Ehling, L. Bonati, J. Dahinden, P. Gainza, B. E. Correia, S. T. Reddy "Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning" Zenodo 2021, 10.5281/zenodo.4899270.
S. Fischer, T. R. Ward, A. D. Liang "Engineering a Metathesis-Catalyzing Artificial Metalloenzyme Basedon HaloTag" Zenodo 2021, 10.5281/zenodo.4898986.
C. Lormeau, F. Rudolf, J. Stelling "A rationally engineered decoder of transient intracellular signals" Zenodo 2021, 10.5281/zenodo.4896576.
J. S. Fleck, F. Sanchís-Calleja, Z. He, M. Santel, M. J. Boyle, J. G. Camp, B.Treutlein "Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases" Zenodo 2021, 10.5281/zenodo.4889739.
Q. Yu, U. Kilik, E. M. Holloway, Y.-H. Tsai, C. Harmel, A. Wu, J. H. Wu, M. Czerwinski, C. Childs, Z. He, M. M. Capeling, S. Huang, I. Glass, P. D. R. Higgins, B. Treutlein, J. R. Spence, J. G. Camp "Charting human development using a multi-organ atlas and organoid models" Mendeley Data 2021, 10.17632/x53tts3zfr.2.
S. J. Nemat, D. Van den Eynden, L. Deblock, M. Heilmann, J. M. Köster, M. Parvizian, K. Tiefenbacher, J. De Roo "Resorcin[4]arene-based multidentate phosphate ligands with superior binding affinity for nanocrystal surfaces" Zenodo 2021, 10.5281/zenodo.4704267.
J. B. Bilger, C. Kerzig, B. Larsen, O. S. Wenger "A Photorobust Mo(0) Complex Mimicking [Os(2,2′-bipyridine)3]2+ and Its Application in Red-to-Blue Upconversion" Zenodo 2021, 10.5281/zenodo.4621006.
D. Daubian, A. Fillion, J. Gaitzsch, W. Meier "One-Pot Synthesis of an Amphiphilic ABC Triblock Copolymer PEO-b-PEHOx-b-PEtOz and Its Self-Assembly into Nanoscopic Asymmetric Polymersomes" Zenodo 2021, 10.5281/zenodo.4620846.
B. Yang, H. Liu, Z. Liu, R. Doenen, M. A. Nash "Influence of Fluorination on Single-Molecule Unfolding and RupturePathways of a Mechanostable Protein Adhesion Complex" Zenodo 2021, 10.5281/zenodo.4620668.
C. Yang, F. Sesterhenn, J. Bonet, E. A. van Aalen, L. Scheller, L. A. Abriata, J. T. Cramer, X. Wen, S. Rosset, S. Georgeon, T. Jardetzky, T. Krey, M. Fussenegger, M. Merkx, B. E. Correia "Bottom-up de novo design of functional proteins with complex structural features" Zenodo 2021, 10.5281/zenodo.4604636.
S. Merget, L. Catti, S. Zev, D. T. Major, N. Trapp, K. Tiefenbacher "Concentration-Dependent Self-Assembly of an Unusually Large Hexameric Hydrogen-Bonded Molecular Cage" Zenodo 2021, 10.5281/zenodo.4604574.
J. García-Calvo, J. López-Andarias, N. Sakai, S. Matile "The primary dipole of flipper probes" Zenodo 2021, 10.5281/zenodo.4584731.
F. Piazzolla, V. Mercier, L. Assies, N. Sakai, A. Roux, S. Matile "Fluorescent Membrane Tension Probes for Early Endosomes" Zenodo 2021, 10.5281/zenodo.4441675.
J. López-Andarias, K. Straková, R. Martinent, N. Jiménez-Rojo, H. Riezman, N. Sakai, S. Matile "Genetically Encoded Supramolecular Targeting of Fluorescent Membrane Tension Probes within Live Cells: Precisely Localized Controlled Release by External Chemical Stimulation" Zenodo 2020, 10.5281/zenodo.4322854.
Y. Cheng, A.-T. Pham, T. Kato, B. Lim, D. Moreau, J. López-Andarias, L. Zong, N. Sakai, S. Matile "Inhibitors of Thiol-Mediated Uptake. Original Data" Zenodo 2020, 10.5281/zenodo.4109128.
E. Mace, G. Montaldo "Whole-brain visually evoked activity maps in head-fixed awake mice" Zenodo 2020, 10.5281/zenodo.4040957.
K. Straková, J. López-Andarias, N. Jiménez-Rojo, J. E. Chambers, S. J. Marciniak, H. Riezman, N. Sakai, S. Matile "HaloFlippers: A General Tool for the Fluorescence Imaging of Precisely Localized Membrane Tension Changes in Living Cells-1" Zenodo 2020, 10.5281/zenodo.3929529.
R. Martinent, J. López-Andarias, D. Moreau, Y. Cheng, N. Sakai, S. Matile "Automated high-content imaging for cellular uptake, from the Schmuck cation to the latest cyclic oligochalcogenides" Zenodo 2020, 10.5281/zenodo.3925075.
S. Matile, A.-T. Pham "Peptide stapling with anion-π catalysts" Yareta 2020, 10.26037/yareta:3a4bmazjv5axxpjtnp2rqcvq5y.
R. Martinent,D. Du, J. López-Andarias, N. Sakai, S. Matile "Oligomers of Cyclic Oligochalcogenides for Enhanced Cellular Uptake" Yareta 2020, 10.26037/yareta:vxej5zxx5bhejk5z2aucufscay.
M. Paraja, S. Matile, N. Sakai, C. Besnard, A. Poblador Bahamonde, A. Gini, B. Galmés, A. Frontera "Pnictogen-bonding catalysis: Brevetoxin-type polyether cyclizations" Yareta 2020, 10.26037/yareta:qvwfjnq5mnd4fnv4x2cq3lr2v4.
T. Kato, K. Strakova, J. García-Calvo, N. Sakai, S. Matile "Mechanosensitive Fluorescent Probes, Changing Color Like Lobsters During Cooking: Cascade Switching Variations" Yareta 2020, 10.26037/yareta:r2nggd6havcsxov7etvsjaeq3a.
J. García-Calvo, J. Maillard, I. Funeraj, K. Strakova, A Colom, V. Mercier, A. Roux, E. Vauthey, N. Sakai, A. Fürstenberg, S. Matile "Fluorescent Membrane Tension Probes for Super-Resolution Microscopy: Combining Mechanosensitive Cascade Switching with Dynamic-Covalent Ketone Chemistry" Yareta 2020, 10.26037/yareta:ig23nd7ggvfoxetygmtm7c5x24.
M. Paraja, A: Gini, N. Sakai, S. Matile "Pnictogen-Bonding Catalysis: An Interactive Tool to Uncover Unorthodox Mechanisms in Polyether Cascade Cyclizations" Yareta 2020, 10.26037/yareta:fhocfgxduzf3fpg6zds42yvoni.
I Shybeka, A. Aster, Y. Cheng, N. Sakai, A. Frontera, E. Vauthey, S. Matile "Naphthalenediimides with Cyclic Oligochalcogenides in Their Core" Yareta 2020, 10.26037/yareta:mskur6ijhjft7cugphvb3wrsum.
X. Hao, S. Matile, M. Paraja "Polyether Natural Product Inspired Cascade Cyclizations Autocatalyzed on π-Acidic Aromatic Surfaces" Yareta 2020, 10.26037/yareta:al5vrkinhbfznce7ffgl7mohq4.
S. Matile, M. Paraja "Primary Anion-π Catalysis of Epoxide-Opening Ether Cyclizations into Rings of Different Sizes: Access to New Reactivities" Yareta 2020, 10.26037/yareta:jediokbtqbfoxisiy34uq4q42e.
D. Moreau,N. Winssinger, Q. Laurent, Y. Cheng, J. López-Andarias, J. Saarbach, E. Derivery, N. Sakai, S. Matile, M. González-Gaitán "Cell-Penetrating Streptavidin: A General Tool for Bifunctional Delivery with Spatiotemporal Control, Mediated by Transport Systems such as Adaptive Benzopolysulfane Networks" Yareta 2020, 10.26037/yareta:v7airh7g7rfrlpa3s7m64unefy.
G. Licari, N. Sakai, S. Matile, H. Humeniuk, E. Vauthey "Mechanosensitive Membrane Probes: Push-Pull Papillons" Yareta 2019, 10.26037/yareta:5b2y3rzii5hufg6hpled2yyrlm.