Datasets

M. A. Saucedo-Espinosa, P. S. Dittrich "In-Droplet Electrophoretic Separation and Enrichment of Biomolecules" Zenodo 2021, 10.5281/zenodo.5148160.

J. S. Fleck, F. Sanchís-Calleja, Z. He, M. Santel, M. J. Boyle, J. G. Camp, B.Treutlein "Resolving Organoid Brain Region Identities by Mapping Single-Cell Genomic Data to Reference Atlases" Zenodo 2021, 10.5281/zenodo.5148000.

M. A. Beliaeva, F. Leisinger, F. P. Seebeck "In Vitro Reconstitution of a Five-Step Pathway for Bacterial Ergothioneine Catabolism" Zenodo 2021, 10.5281/zenodo.5145392.

F. Leisinger, D. A. Miarzlou, F. P. Seebeck "Non-Coordinative Binding of O2 at the Active Center of a Copper-Dependent Enzyme" Zenodo 2021, 10.5281/zenodo.5145371.

M. A. Beliaeva, R. Burn, D. Lim, F. P. Seebeck "In Vitro Production of Ergothioneine Isotopologues" Zenodo 2021, 10.5281/zenodo.5145352.

D. Lim, X. Wen, F. P. Seebeck "Selenoimidazolium Salts as Supramolecular Reagents for Protein Alkylation" Zenodo 2021, 10.5281/zenodo.5145302.

J. Serrano-Plana, C. Rumo, J. G. Rebelein, R. L. Peterson, M. Barnet, T. R. Ward "Enantioselective Hydroxylation of Benzylic C(sp3)–H Bonds by an Artificial Iron Hydroxylase Based on the Biotin–Streptavidin Technology" Zenodo 2021, 10.5281/zenodo.5137190.

D. Scherrer, D. Vogel, U. Drechsler, A. Olziersky, C. Sparr, M. Mayor, E. Lörtscher "Monitoring Solid-Phase Reactions in Self-Assembled Monolayers by Surface-Enhanced Raman Spectroscopy" Zenodo 2021, 10.5281/zenodo.5121608.

M. Mansouri, M.-D. Hussherr, T. Strittmatter, P. Buchmann, S. Xue, G. Camenisch, M. Fussenegger "Smart-Watch-Programmed Green-Light-Operated Percutaneous Control of Therapeutic Transgenes" Zenodo 2021, 10.5281/zenodo.5119105.

G. Fläschner, C. I. Roman, N. Strohmeyer, D. Martinez-Martin, D. J. Müller "Rheology of Rounded Mammalian Cells Over Continuous High-Frequencies" Zenodo 2021, 10.5281/zenodo.5118965.

H. Dekkiche, J. Malinčik, A. Prescimone, D. Häussinger, M. Mayor "An Ortho-Tetraphenylene-Based «Geländer»-Architecture Consisting Exclusively of 52 sp2 Hybridized C-Atoms" Zenodo 2021, 10.5281/zenodo.5118919.

V. Sabatino, D. Staub, T. R. Ward "Synthesis of N-Substituted Indoles via Aqueous Ring-Closing Metathesis" Zenodo 2021, 10.5281/zenodo.5118840.

L. Zartner, M. Garni, I. Craciun, T. Einfalt, C. G. Palivan "How Can Giant Plasma Membrane Vesicles Serve as a Cellular Model for Controlled Transfer of Nanoparticles?" Zenodo 2021, 10.5281/zenodo.5101536.

A. Belluati, I. Craciun, C. G. Palivan "Bioactive Catalytic Nanocompartments Integrated into Cell Physiology and Their Amplification of a Native Signaling Cascade" Zenodo 2021, 10.5281/zenodo.5101442.

S. Rigo, D. Hürlimann, L. Marot, M. Malmsten, W. Meier, C. G. Palivan "Decorating Nanostructured Surfaces with Antimicrobial Peptides to Efficiently Fight Bacteria" Zenodo 2021, 10.5281/zenodo.5101413.

S. Hirschi, D. Kalbermatter, Z. Ucurum, T. Lemmin, D. Fotiadis "Cryo-EM structure and dynamics of the green-light absorbing proteorhodopsin" Zenodo 2021, 10.5281/zenodo.5101367.

A. Samanta, V. Sabatino, T. R. Ward, A. Walther "Functional and morphological adaptation in DNA protocells via signal processing prompted by artificial metalloenzymes" Zenodo 2021, 10.5281/zenodo.5101328.

S. Hirschi, D. Kalbermatter, Z. Ucurum, D. Fotiadis "Cryo-electron microscopic and X-ray crystallographic analysis of the light- driven proton pump proteorhodopsin reveals a pentameric assembly" Zenodo 2021, 10.5281/zenodo.5092129.

J. Liu, I. Craciun, A. Belluati, D. Wu, S. Sieber, T. Einfalt, D. Witzigmann, M. Chami, J. Huwyler, C. G. Palivan "DNA-Directed Arrangement of Soft Synthetic Compartments and Their Behavior In Vitro and In Vivo" Zenodo 2021, 10.5281/zenodo.5091745.

C. E. Meyer, J. Liu, I. Craciun, D. Wu, H. Wang, M. Xie, M. Fussenegger, C. G. Palivan "Segregated Nanocompartments Containing Therapeutic Enzymes and Imaging Compounds within DNA-Zipped Polymersome Clusters for Advanced Nanotheranostic Platform" Zenodo 2021, 10.5281/zenodo.5091657.

T. Vornholt, F. Christoffel, M. M. Pellizzoni, S. Panke, T. R. Ward, M. Jeschek "Systematic Engineering of Artificial Metalloenzymes for New-to-Nature Reactions" Zenodo 2021, 10.5281/zenodo.5084376.

R. Wehr, J. Gaitzsch, D. Daubian, C. Fodor, W. Meier "Deepening the Insight into Poly(butylene oxide)-block-poly(glycidol) Synthesis and Self-assemblies: Micelles, Worms and Vesicles" Zenodo 2021, 10.5281/zenodo.5084338.

S. D. Leone, S. Y. Avsar, A. Belluati, R. Wehr, C. G. Palivan, W. Meier "Polymer–Lipid Hybrid Membranes as a Model Platform to Drive Membrane–Cytochrome c Interaction and Peroxidase-like Activity" Zenodo 2021, 10.5281/zenodo.5084290.

E. C. dos Santos, A. Belluati, D. Necula, D. Scherrer, C. E. Meyer, R. P. Wehr, E. Lörtscher, C. G. Palivan, W. Meier "Combinatorial Strategy for Studying Biochemical Pathways in Double Emulsion Templated Cell-Sized Compartments" Zenodo 2021, 10.5281/zenodo.5084257.

A. Castrogiovanni, D. Lotter, F. R. Bissegger, C. Sparr "JoyaPhos: An Atropisomeric Teraryl Monophosphine Ligand" Zenodo 2021, 10.5281/zenodo.5082320.

F. C. Raps, V. C. Fäseke, D. Häussinger, C. Sparr "Catalyst-Controlled Transannular Polyketide Cyclization Cascades: Selective Folding of Macrocyclic Polyketides" Zenodo 2021, 10.5281/zenodo.5082291.

S. Di Leone, J. Vallapurackal, S. Y. Avsar, M. Kyropolou, T. R. Ward, C. G. Palivan, W. Meier "Expanding the Potential of the Solvent-Assisted Method to CreateBio-Interfaces from Amphiphilic Block Copolymers" Zenodo 2021, 10.5281/zenodo.5082230.

D. Daubian, J. Gaitzsch, W. Meier "Synthesis and Complex Self-Assembly of Amphiphilic Block Copolymers with a Branched Hydrophobic Poly(2-oxazoline) into Multicompartment Micelles, Pseudovesicles and Yolk/Shell Nanoparticles" Zenodo 2021, 10.5281/zenodo.5082191.

F. Sedlmayer, A.-K. Woischnig, V. Unterreiner, F. Fuchs, D. Baeschlin, N. Khanna, M. Fussenegger "5-Fluorouracil blocks quorum-sensing of biofilm-embedded methicillin-resistant Staphylococcus aureus in mice" Zenodo 2021, 10.5281/zenodo.5081731.

M. Reich, M. Dreesbach, D. Boehringer, J. Schottenhamml, E. Gehring, H. P. Scholl, N. Inglin, H. Agostini, T. Reinhard, W. A. Lagrèze, R. F. Spaide, C. Lange, P. M. Maloca "Negative Vessel Remodeling in Stargardt Disease Quantified with Volume-Rendered Optical Coherence Tomography Angiography" Zenodo 2021, 10.5281/zenodo.5079729.

F. Zuttion, A. Colom, S. Matile, D. Farago, F. Pompeo, J. Kokavecz, A. Galinier, J. Sturgis, I. Casuso "High-Speed Atomic Force Microscopy Highlights New Molecular Mechanism of Daptomycin Action" Zenodo 2021, 10.5281/zenodo.5079540.

B. Pfund, D. M. Steffen, M. R. Schreier, M.-S. Bertrams, C. Ye, K. Börjesson, O. S. Wenger, C. Kerzig "UV Light Generation and Challenging Photoreactions Enabled by Upconversion in Water" Zenodo 2021, 10.5281/zenodo.5079343.

M. R. Schreier, B. Pfund, X. Guo, O. S. Wenger "Photo-triggered hydrogen atom transfer from an iridium hydride complex to unactivated olefins" Zenodo 2021, 10.5281/zenodo.5079130.

K. Jahnke, N. Ritzmann, J. Fichtler, A. Nitschke, Y. Dreher, T. Abele, G. Hofhaus, I. Platzman, R. R. Schröder, D. J. Müller, J. P. Spatz, K. Göpfrich "Proton Gradients from Light-Harvesting E. coli Control DNA Assemblies for Synthetic Cells" Zenodo 2021, 10.5281/zenodo.5078924.

M. Knezevic, M. Heilmann, G. M. Piccini, K. Tiefenbacher "Overriding Intrinsic Reactivity in Aliphatic C−H Oxidation: Preferential C3/C4 Oxidation of Aliphatic Ammonium Substrates" Zenodo 2021, 10.5281/zenodo.5078544.

L.-D. Syntrivanis, I. Némethová, D. Schmid, S. Levi, A. Prescimone, F. Bissegger, D. T. Major, K. Tiefenbacher "Four-Step Access to the Sesquiterpene Natural Product Presilphiperfolan-1β-ol and Unnatural Derivatives via Supramolecular Catalysis" Zenodo 2021, 10.5281/zenodo.5078512.

S. J. Nemat, H. Jędrzejewska, A. Prescimone, A. Szumna, K. Tiefenbacher "Catechol[4]arene: The Missing Chiral Member of the Calix[4]arene Family" Zenodo 2021, 10.5281/zenodo.5078453.

K. Krawczyk, L. Scheller, H. Kim, M. Fussenegger "Rewiring of endogenous signaling pathways to genomic targets for therapeutic cell reprogramming" Zenodo 2021, 10.5281/zenodo.5078411.

K. Krawczyk, S. Xue, P. Buchmann, G. Charpin-El-Hamri, P. Saxena, M.-D. Hussherr, J. Shao, H. Ye, M. Xie, M. Fussenegger "Electrogenetic cellular insulin release for real-time glycemic control in type 1 diabetic mice" Zenodo 2021, 10.5281/zenodo.5078383.

H. J. Davis, D. Häussinger, T. R. Ward, Y. Okamoto "A visible-light promoted amine oxidation catalyzed by a Cp*Ir complex" Zenodo 2021, 10.5281/zenodo.5078354.

K. Strakova, S. Matile "Twisting and tilting of a mechanosensitive molecular probe detects order in membranes" Zenodo 2021, 10.5281/zenodo.5041772.

A. Stucki, P. Jusková, N. Nuti, S. Schmitt, P. S. Dittrich "Synchronized reagent delivery in double emulsions for triggering chemical reactions and gene expression" Zenodo 2021, 10.5281/zenodo.5004699.

V. Haellman, P. Saxena, Y. Jiang, M. Fussenegger "Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells" Zenodo 2021, 10.5281/zenodo.4980485.

V. Haellman, T. Strittmatter, A. Bertschi, P. Stücheli, M. Fussenegger "A versatile plasmid architecture for mammalian synthetic biology (VAMSyB)" Zenodo 2021, 10.5281/zenodo.4980395.

J. Doshi, K. Willis, A. Madurga, C. Stelzer, Y. Benenson "Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells" Zenodo 2021, 10.5281/zenodo.4916150.

O. Zabek, H. C. Zuche, U. Müller, H. P. N. Scholl, A. Rickmann, M. della Volpe Waizel "Optical coherence tomography angiography findings in patients undergoing transcorneal electrical stimulation for treating retinitis pigmentosa" Zenodo 2021, 10.5281/zenodo.4916061.

S. Höllerer, L. Papaxanthos, A. C. Gumpinger, K. Fischer, C. Beisel, K. Borgwardt, Y. Benenson, & M. Jeschek "Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping" Zenodo 2021, 10.5281/zenodo.4911473.

L. Scheller, M. Schmollack, A. Bertschi, M. Mansouri, P. Saxena, M. Fussenegger "Phosphoregulated orthogonal signal transduction in mammalian cells" Zenodo 2021, 10.5281/zenodo.4911457.

G. Giordano-Attianese, P. Gainza, E. Gray-Gaillard, E. Cribioli, S. Shui, S. Kim, M.-J. Kwak, S. Vollers, A. D. J. C. Osorio, P. Reichenbach, J. Bonet, B.-H. Oh, M. Irving, G. Coukos, B. E. Correia "A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy" Zenodo 2021, 10.5281/zenodo.4905683.

M. Rybiński, S. Möller, M. Sunnåker, C. Lormeau, J. Stelling "TopoFilter: a MATLAB package for mechanistic model identification in systems biology" Zenodo 2021, 10.5281/zenodo.4899363.

T. Tanna, F. Schmidt, M. Y. Cherepkova, M. Okoniewski, R. J. Platt "Recording transcriptional histories using Record-seq" Zenodo 2021, 10.5281/zenodo.4899333.

D. M. Mason, S. Friedensohn, C. R. Weber, C. Jordi, B. Wagner, S. M. Meng, R. A. Ehling, L. Bonati, J. Dahinden, P. Gainza, B. E. Correia, S. T. Reddy "Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning" Zenodo 2021, 10.5281/zenodo.4899270.

S. Fischer, T. R. Ward, A. D. Liang "Engineering a Metathesis-Catalyzing Artificial Metalloenzyme Basedon HaloTag" Zenodo 2021, 10.5281/zenodo.4898986.

C. Lormeau, F. Rudolf, J. Stelling "A rationally engineered decoder of transient intracellular signals" Zenodo 2021, 10.5281/zenodo.4896576.

J. S. Fleck, F. Sanchís-Calleja, Z. He, M. Santel, M. J. Boyle, J. G. Camp, B.Treutlein "Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases" Zenodo 2021, 10.5281/zenodo.4889739.

Q. Yu, U. Kilik, E. M. Holloway, Y.-H. Tsai, C. Harmel, A. Wu, J. H. Wu, M. Czerwinski, C. Childs, Z. He, M. M. Capeling, S. Huang, I. Glass, P. D. R. Higgins, B. Treutlein, J. R. Spence, J. G. Camp "Charting human development using a multi-organ atlas and organoid models" Mendeley Data 2021, 10.17632/x53tts3zfr.2.

S. J. Nemat, D. Van den Eynden, L. Deblock, M. Heilmann, J. M. Köster, M. Parvizian, K. Tiefenbacher, J. De Roo "Resorcin[4]arene-based multidentate phosphate ligands with superior binding affinity for nanocrystal surfaces" Zenodo 2021, 10.5281/zenodo.4704267.

J. B. Bilger, C. Kerzig, B. Larsen, O. S. Wenger "A Photorobust Mo(0) Complex Mimicking [Os(2,2′-bipyridine)3]2+ and Its Application in Red-to-Blue Upconversion" Zenodo 2021, 10.5281/zenodo.4621006.

D. Daubian, A. Fillion, J. Gaitzsch, W. Meier "One-Pot Synthesis of an Amphiphilic ABC Triblock Copolymer PEO-b-PEHOx-b-PEtOz and Its Self-Assembly into Nanoscopic Asymmetric Polymersomes" Zenodo 2021, 10.5281/zenodo.4620846.

B. Yang, H. Liu, Z. Liu, R. Doenen, M. A. Nash "Influence of Fluorination on Single-Molecule Unfolding and RupturePathways of a Mechanostable Protein Adhesion Complex" Zenodo 2021, 10.5281/zenodo.4620668.

C. Yang, F. Sesterhenn, J. Bonet, E. A. van Aalen, L. Scheller, L. A. Abriata, J. T. Cramer, X. Wen, S. Rosset, S. Georgeon, T. Jardetzky, T. Krey, M. Fussenegger, M. Merkx, B. E. Correia "Bottom-up de novo design of functional proteins with complex structural features" Zenodo 2021, 10.5281/zenodo.4604636.

S. Merget, L. Catti, S. Zev, D. T. Major, N. Trapp, K. Tiefenbacher "Concentration-Dependent Self-Assembly of an Unusually Large Hexameric Hydrogen-Bonded Molecular Cage" Zenodo 2021, 10.5281/zenodo.4604574.

J. García-Calvo, J. López-Andarias, N. Sakai, S. Matile "The primary dipole of flipper probes" Zenodo 2021, 10.5281/zenodo.4584731.

F. Piazzolla, V. Mercier, L. Assies, N. Sakai, A. Roux, S. Matile "Fluorescent Membrane Tension Probes for Early Endosomes" Zenodo 2021, 10.5281/zenodo.4441675.

J. López-Andarias, K. Straková, R. Martinent, N. Jiménez-Rojo, H. Riezman, N. Sakai, S. Matile "Genetically Encoded Supramolecular Targeting of Fluorescent Membrane Tension Probes within Live Cells: Precisely Localized Controlled Release by External Chemical Stimulation" Zenodo 2020, 10.5281/zenodo.4322854.

Y. Cheng, A.-T. Pham, T. Kato, B. Lim, D. Moreau, J. López-Andarias, L. Zong, N. Sakai, S. Matile "Inhibitors of Thiol-Mediated Uptake. Original Data" Zenodo 2020, 10.5281/zenodo.4109128.

E. Mace, G. Montaldo "Whole-brain visually evoked activity maps in head-fixed awake mice" Zenodo 2020, 10.5281/zenodo.4040957.

K. Straková, J. López-Andarias, N. Jiménez-Rojo, J. E. Chambers, S. J. Marciniak, H. Riezman, N. Sakai, S. Matile "HaloFlippers: A General Tool for the Fluorescence Imaging of Precisely Localized Membrane Tension Changes in Living Cells-1" Zenodo 2020, 10.5281/zenodo.3929529.

R. Martinent, J. López-Andarias, D. Moreau, Y. Cheng, N. Sakai, S. Matile "Automated high-content imaging for cellular uptake, from the Schmuck cation to the latest cyclic oligochalcogenides" Zenodo 2020, 10.5281/zenodo.3925075.

S. Matile, A.-T. Pham "Peptide stapling with anion-π catalysts" Yareta 2020, 10.26037/yareta:3a4bmazjv5axxpjtnp2rqcvq5y.

R. Martinent,D. Du, J. López-Andarias, N. Sakai, S. Matile "Oligomers of Cyclic Oligochalcogenides for Enhanced Cellular Uptake" Yareta 2020, 10.26037/yareta:vxej5zxx5bhejk5z2aucufscay.

M. Paraja, S. Matile, N. Sakai, C. Besnard, A. Poblador Bahamonde, A. Gini, B. Galmés, A. Frontera "Pnictogen-bonding catalysis: Brevetoxin-type polyether cyclizations" Yareta 2020, 10.26037/yareta:qvwfjnq5mnd4fnv4x2cq3lr2v4.

T. Kato, K. Strakova, J. García-Calvo, N. Sakai, S. Matile "Mechanosensitive Fluorescent Probes, Changing Color Like Lobsters During Cooking: Cascade Switching Variations" Yareta 2020, 10.26037/yareta:r2nggd6havcsxov7etvsjaeq3a.

J. García-Calvo, J. Maillard, I. Funeraj, K. Strakova, A Colom, V. Mercier, A. Roux, E. Vauthey, N. Sakai, A. Fürstenberg, S. Matile "Fluorescent Membrane Tension Probes for Super-Resolution Microscopy: Combining Mechanosensitive Cascade Switching with Dynamic-Covalent Ketone Chemistry" Yareta 2020, 10.26037/yareta:ig23nd7ggvfoxetygmtm7c5x24.

M. Paraja, A: Gini, N. Sakai, S. Matile "Pnictogen-Bonding Catalysis: An Interactive Tool to Uncover Unorthodox Mechanisms in Polyether Cascade Cyclizations" Yareta 2020, 10.26037/yareta:fhocfgxduzf3fpg6zds42yvoni.

I Shybeka, A. Aster, Y. Cheng, N. Sakai, A. Frontera, E. Vauthey, S. Matile "Naphthalenediimides with Cyclic Oligochalcogenides in Their Core" Yareta 2020, 10.26037/yareta:mskur6ijhjft7cugphvb3wrsum.

X. Hao, S. Matile, M. Paraja "Polyether Natural Product Inspired Cascade Cyclizations Autocatalyzed on π-Acidic Aromatic Surfaces" Yareta 2020, 10.26037/yareta:al5vrkinhbfznce7ffgl7mohq4.

S. Matile, M. Paraja "Primary Anion-π Catalysis of Epoxide-Opening Ether Cyclizations into Rings of Different Sizes: Access to New Reactivities" Yareta 2020, 10.26037/yareta:jediokbtqbfoxisiy34uq4q42e.

D. Moreau,N. Winssinger, Q. Laurent, Y. Cheng, J. López-Andarias, J. Saarbach, E. Derivery, N. Sakai, S. Matile, M. González-Gaitán "Cell-Penetrating Streptavidin: A General Tool for Bifunctional Delivery with Spatiotemporal Control, Mediated by Transport Systems such as Adaptive Benzopolysulfane Networks" Yareta 2020, 10.26037/yareta:v7airh7g7rfrlpa3s7m64unefy.

G. Licari, N. Sakai, S. Matile, H. Humeniuk, E. Vauthey "Mechanosensitive Membrane Probes: Push-Pull Papillons" Yareta 2019, 10.26037/yareta:5b2y3rzii5hufg6hpled2yyrlm.